Nope. for me The Walking Wounded>Self Title> Shudder=Killing Time (Both equally great)> Sirens and Condolences. That is not even counting the acoustic album Devotion and Desire acoustic is fantastic.
But yea The Walking Wounded is very special to me. Something about that album is very personal and I love it. The energy on it is divine. The self title is great and the way Bayside churns out great albums is just proof they are a great band but if I had to pick a favorite The Walking Wounded any day.
Edit: Just realized I saw Bayside at the same venue within exactly a year. Saw them with Saves The Day and then with Taking Back Sunday at the same venue on about the same weekend in November. I also saw them at warped this year. They never get old though. They were the perfect band to tour with Taking Back Sunday so that just made that awesome experience (which I dreamed of since high school - the whole tell all your friends in entirety) even better.